chr6:32697643:T>G Detail (hg38)
Information
Genome
| Assembly | Position |
|---|---|
| hg19 | chr6:32,665,420-32,665,420 View the variant detail on this assembly version. |
| hg38 | chr6:32,697,643-32,697,643 |
HGVS
[No Data.]
Summary
MGeND
| Clinical significance | |
| Variant entry | |
| GWAS entry | |
| Disease area statistics | Show details |
Frequency
| JP | HGVD:[No Data.] |
| ToMMo:0.056 | |
| NCBN:[No Data.] | |
| NCBN(Hondo):[No Data.] | |
| NCBN(Ryukyu):[No Data.] | |
| East asia | ExAC:[No Data.] |
Prediction
ClinVar
| Clinical Significance | |
| Review star | [No Data.] |
| Show details | |
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
| Score | Disease name | Description | Source | Pubmed | Links |
|---|---|---|---|---|---|
| 0.001 | Lymphoma, Follicular | In recent genome-wide association studies (GWAS) of FL, several genetic suscepti... | BeFree | 23025665 | Detail |
| 0.005 | Lymphoma, Follicular | [Genome-wide association study of follicular lymphoma identifies a risk locus at... | GAD | 20639881 | Detail |
| <0.001 | Lymphoma, Follicular | The TAP2 SNP was strongly associated with follicular lymphoma (FL, OR = 1.82, 95... | BeFree | 22911334 | Detail |
Annotation
Annotations
| Descrption | Source | Links |
|---|---|---|
| In recent genome-wide association studies (GWAS) of FL, several genetic susceptibility loci have bee... | DisGeNET | Detail |
| [Genome-wide association study of follicular lymphoma identifies a risk locus at 6p21.32.] | DisGeNET | Detail |
| The TAP2 SNP was strongly associated with follicular lymphoma (FL, OR = 1.82, 95%CI 1.46-2.26; p = 6... | DisGeNET | Detail |
- Gene
- -
- dbSNP
- rs10484561 dbSNP
- Genome
- hg38
- Position
- chr6:32,697,643-32,697,643
- Variant Type
- snv
- Reference Allele
- T
- Alternative Allele
- G
- ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- PASS
- Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- rs10484561
- Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 0.0562
- Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 942
- Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 16760
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